Bacteriology | Research Interests

Name	Email	PhD Program
Liu, Qingyun WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Genetics & Molecular Biology, Microbiology & Immunology RESEARCH INTEREST Bacteriology, Bioinformatics, Ecology, Evolutionary Biology, Genetics, Genomics, Microscopy/Imaging, Molecular Biology, Molecular Mechanisms of Disease, Pathogenesis & Infection	Infectious diseases due to highly pathogenic microbes continue to pose a persistent and evolving threat to humans. In this laboratory, we study the evolutionary mechanisms underlying drug resistance and transmissibility in bacterial pathogens, including Mycobacterium tuberculosis and Mycobacterium abscessus, among others.
van Duin, David WEBSITE EMAIL	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Antibiotics/Antivirals, Bacteriology, Disease, Pathogenesis & Infection, Translational Medicine	I am a clinical/translational researcher in Infectious Diseases. I am the Director of the Immunocompromised Host Program – which provides ID care to patients with transplants, malignancies, and burns. My primary research interests are antibacterial resistance in gram-negative bacilli, and infections in vulnerable patients. I am the PI for the Carbapenem Resistance Consortium for Klebsiella and other Enterobacteriaceae (CRACKLE) and PI for the Multi-Drug Resistant Organism (MDRO) Network. I am also supported by NIAID to evaluate community origins of carbapenem-resistant Enterobacterales.
Bartelt, Luther WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Antibiotics/Antivirals, Bacteriology, Immunology, Metabolism, Microbiome, Model Organisms, Molecular Mechanisms of Disease, Translational Medicine, Virology	Our lab performs translational investigations of nutritional and microbiota determinants of host-pathogen interactions. We use gnotobiotic techniques (eg. germ free) mice to investigate complex microbe-microbe interactions in the context of host malnutrition, a common but poorly understood global health problem. Specific pathogens we model include Giardia (a ubiquitous parasite with unclear mechanisms of pathogenesis) and other intestinal parasites and multi drug resistant Enterobacterales (eg. Klebsiella). We work with several collaborators to translate findings in experimental models to outcomes in human cohorts. Emerging projects include determinants of host immune responses to mucosal viral infections and vaccines (eg. Polio and SARS-CoV-2).
Rowe-Conlon, Sarah WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Antibiotics/Antivirals, Bacteriology, Diabetes, Drug Delivery, Drug Discovery, Pathogenesis & Infection, Pharmacology, Translational Medicine	My lab studies recalcitrant bacterial infections and antibiotic treatment failure. Focusing on bacteremia and wound infection, we utilize a range of in vitro, tissue culture and mouse models to understand the precise nature of treatment failure and exploit this knowledge to modulate antibiotic activity in the host environment. My long-term goal is to bring improved therapeutic strategies to the bedside.
Rosenthal, Adam WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology, Pathobiology & Translational Science RESEARCH INTEREST Bacteriology, Molecular Biology, Pathogenesis & Infection, Systems Biology	Our lab uses a systems biology approach to study phenotypic heterogeneity in bacteria. We develop tools that quantify single cell bacterial transcription. We then compare dynamic measurements during vegetative growth and infection to identify regulators of gene expression and mechanisms that bacteria use to coordinate community organization. With this data we want to understand the role of heterogeneity and noise in infectious disease.
Thurlow, Lance EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Bacteriology, Cell Signaling, Immunology, Metabolism, Pathogenesis & Infection	By 2035, more than 500 million people worldwide will be diagnosed with diabetes. Individuals with diabetes are prone to frequent and invasive infections that commonly manifest as skin and soft tissue infections (SSTIs). Staphylococcus aureus is the most commonly isolated pathogen from diabetic SSTI. S. aureus is a problematic pathogen that is responsible for tens of thousands of invasive infections and deaths annually in the US. Most S. aureus infections manifest as skin and soft tissue infections (SSTIs) that are usually self-resolving. However, in patients with comorbidities, particularly diabetes, S. aureus SSTIs can disseminate resulting in systemic disease including osteomyelitis, endocarditis and sepsis. The goal of my research is to understand the complex interactions between bacterial pathogens and the host innate immune response with focus on S. aureus and invasive infections associated with diabetes. My research is roughly divided into two project areas in order to understand the contributions of the pathogen and the host response to invasive infections associated with diabetes. Project 1: Defining mechanisms of immune suppression in diabetic infections. Project 2: Determine the role of bacterial metabolism in virulence potential and pathogenesis.
Azcarate-Peril, M. Andrea WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Nutrition RESEARCH INTEREST Bacteriology, Bioinformatics, Genomics, Molecular Biology, Systems Biology	We are interested in determining the mechanisms involved in the beneficial modulation of the gut microbiota by prebiotics (functional foods that stimulate growth of gut native beneficial bacteria) and probiotics (live bacteria that benefit their host). Specifically, we aim to develop prebiotic and probiotic interventions as alternatives to traditional treatments for microbiota-health related conditions, and to advance microbiota-based health surveillance methods.
Duncan, Alex WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Pharmacology RESEARCH INTEREST Bacteriology, Biochemistry, Cell Signaling, Immunology, Pathogenesis & Infection	My lab studies a recently identified pathogen-sensing signaling complex known as the inflammasome. The inflammasome is responsible for the proteolytic maturation of some cytokines and induces a novel necrotic cell death program. We have found that critical virulence factors from certain pathogens are able to activate NLRP3-mediated signaling, suggesting these pathogens may exploit this host signaling system in order to promote infections. Our lab has active research projects in several areas relating to inflammasome signaling ranging from understanding basic molecular mechanisms of the pathway to studying the role of the system in animal models of infectious diseases.
de Silva, Aravinda WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Bacteriology, Cell Biology, Immunology, Molecular Biology, Pathogenesis & Infection	We study Borrelia burgdorferi (the agent of Lyme disease) as a model for understanding arthropod vector-borne disease transmission. We also study the epidemiology and pathogenesis of dengue viruses associated with hemorrhagic disease.
Cotter, Peggy WEBSITE EMAIL PUBLICATIONS	PHD PROGRAM Microbiology & Immunology RESEARCH INTEREST Bacteriology, Biochemistry, Genetics, Molecular Biology, Pathogenesis & Infection	Dr. Cotter’s research is aimed at understanding molecular mechanisms of bacterial pathogenesis. Using Bordetella species as models, her group is studying the role of virulence gene regulation in respiratory pathogenesis, how virulence factors activate and suppress inflammation in the respiratory tract, and how proteins of the Two Partner Secretion pathway family are secreted to the bacterial surface and into the extracellular environment. A second major project is focused on Burkholderia pseudomallei, an emerging infectious disease and potential biothreat agent. This research is aimed at understanding the role of autotransporter proteins in the ability of this organism to cause disease via the respiratory route.

Research Interest: Bacteriology